Package: trf (4.09.1-6 and others)
Links for trf
Debian Resources:
Download Source Package trf:
Maintainers:
External Resources:
- Homepage [tandem.bu.edu]
Similar packages:
locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
Other Packages Related to trf
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- dep: libc6 (>= 2.34) [not alpha, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.35) [sh4]
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- dep: libc6.1 (>= 2.29) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.35) [ia64]
Download trf
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 4.09.1-6 | 56.9 kB | 183.0 kB | [list of files] |
| amd64 | 4.09.1-6 | 56.9 kB | 167.0 kB | [list of files] |
| arm64 | 4.09.1-6 | 52.9 kB | 183.0 kB | [list of files] |
| armel | 4.09.1-6 | 55.4 kB | 182.0 kB | [list of files] |
| armhf | 4.09.1-6 | 53.0 kB | 182.0 kB | [list of files] |
| hppa (unofficial port) | 4.09.1-6 | 54.3 kB | 159.0 kB | [list of files] |
| i386 | 4.09.1-6 | 55.7 kB | 166.0 kB | [list of files] |
| ia64 (unofficial port) | 4.09.1-6 | 68.7 kB | 231.0 kB | [list of files] |
| m68k (unofficial port) | 4.09.1-6 | 51.6 kB | 158.0 kB | [list of files] |
| mips64el | 4.09.1-6 | 55.3 kB | 187.0 kB | [list of files] |
| ppc64 (unofficial port) | 4.09.1-6 | 58.6 kB | 183.0 kB | [list of files] |
| ppc64el | 4.09.1-6 | 58.0 kB | 183.0 kB | [list of files] |
| riscv64 | 4.09.1-6+b1 | 55.4 kB | 148.0 kB | [list of files] |
| s390x | 4.09.1-6 | 53.8 kB | 163.0 kB | [list of files] |
| sh4 (unofficial port) | 4.09.1-6 | 59.4 kB | 182.0 kB | [list of files] |
| sparc64 (unofficial port) | 4.09.1-6 | 53.6 kB | 1,080.0 kB | [list of files] |
| x32 (unofficial port) | 4.09.1-6 | 54.8 kB | 154.0 kB | [list of files] |