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[ Source: ntcard  ]

Package: ntcard (1.2.2+dfsg-8 and others)

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Streaming algorithm to estimate cardinality in genomics datasets

As input it takes file(s) in fasta, fastq, sam, or bam formats and computes the total number of distinct k-mers, F0, and also the k-mer coverage frequency histogram, fi, i>=1.

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Download ntcard

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.2.2+dfsg-4 40.6 kB219.0 kB [list of files]
amd64 1.2.2+dfsg-8 40.6 kB169.0 kB [list of files]
arm64 1.2.2+dfsg-8 38.7 kB217.0 kB [list of files]
hppa (unofficial port) 1.2.2+dfsg-4 41.3 kB139.0 kB [list of files]
ia64 (unofficial port) 1.2.2+dfsg-4 47.4 kB230.0 kB [list of files]
m68k (unofficial port) 1.2.2+dfsg-4 39.8 kB143.0 kB [list of files]
mips64el 1.2.2+dfsg-8 41.3 kB222.0 kB [list of files]
ppc64 (unofficial port) 1.2.2+dfsg-8 42.9 kB281.0 kB [list of files]
ppc64el 1.2.2+dfsg-8 42.6 kB217.0 kB [list of files]
riscv64 1.2.2+dfsg-8 40.3 kB149.0 kB [list of files]
s390x 1.2.2+dfsg-8 41.3 kB169.0 kB [list of files]
sh4 (unofficial port) 1.2.2+dfsg-4 43.7 kB217.0 kB [list of files]
sparc64 (unofficial port) 1.2.2+dfsg-4 35.9 kB2,079.0 kB [list of files]
x32 (unofficial port) 1.2.2+dfsg-4 39.2 kB143.0 kB [list of files]