Package: miniasm (0.3+dfsg-4 and others)

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ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Other Packages Related to miniasm

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.35) [sh4]
dep: libc6.1 (>= 2.27) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.35) [ia64]
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: minimap

tool for approximate mapping of long biosequences such as DNA reads

Download miniasm

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.3+dfsg-4	31.2 kB	83.0 kB	[list of files]
amd64	0.3+dfsg-4	29.2 kB	71.0 kB	[list of files]
arm64	0.3+dfsg-4	26.4 kB	82.0 kB	[list of files]
armel	0.3+dfsg-4	27.7 kB	82.0 kB	[list of files]
armhf	0.3+dfsg-4	26.3 kB	82.0 kB	[list of files]
hppa (unofficial port)	0.3+dfsg-4	29.3 kB	67.0 kB	[list of files]
i386	0.3+dfsg-4	31.2 kB	78.0 kB	[list of files]
ia64 (unofficial port)	0.3+dfsg-4	38.2 kB	113.0 kB	[list of files]
m68k (unofficial port)	0.3+dfsg-4	25.9 kB	66.0 kB	[list of files]
mips64el	0.3+dfsg-4	29.7 kB	86.0 kB	[list of files]
ppc64 (unofficial port)	0.3+dfsg-4	32.3 kB	147.0 kB	[list of files]
ppc64el	0.3+dfsg-4	31.9 kB	83.0 kB	[list of files]
riscv64	0.3+dfsg-4+b1	29.9 kB	60.0 kB	[list of files]
s390x	0.3+dfsg-4	28.4 kB	70.0 kB	[list of files]
sh4 (unofficial port)	0.3+dfsg-4	29.0 kB	82.0 kB	[list of files]
sparc64 (unofficial port)	0.3+dfsg-4	26.4 kB	1,044.0 kB	[list of files]
x32 (unofficial port)	0.3+dfsg-4	29.0 kB	70.0 kB	[list of files]