[ Source: ggd-utils ]
Package: ggd-utils (1.0.0+ds-1 and others)
Links for ggd-utils
Debian Resources:
Download Source Package ggd-utils:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes
Other Packages Related to ggd-utils
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- dep: libc6 (>= 2.34) [not alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
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- dep: libgo22 [alpha, ppc64, sparc64, x32]
- Runtime library for GNU Go applications
Download ggd-utils
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.0.0+ds-1+b9 | 190.5 kB | 759.0 kB | [list of files] |
| amd64 | 1.0.0+ds-1+b9 | 1,842.4 kB | 5,300.0 kB | [list of files] |
| arm64 | 1.0.0+ds-1+b9 | 1,592.7 kB | 5,036.0 kB | [list of files] |
| armel | 1.0.0+ds-1+b9 | 1,574.9 kB | 5,179.0 kB | [list of files] |
| armhf | 1.0.0+ds-1+b9 | 1,568.2 kB | 5,155.0 kB | [list of files] |
| i386 | 1.0.0+ds-1+b9 | 1,700.6 kB | 5,195.0 kB | [list of files] |
| mips64el | 1.0.0+ds-1+b9 | 1,439.4 kB | 5,823.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.0.0+ds-1+b9 | 219.6 kB | 1,088.0 kB | [list of files] |
| ppc64el | 1.0.0+ds-1+b9 | 1,584.2 kB | 5,163.0 kB | [list of files] |
| riscv64 (unofficial port) | 1.0.0+ds-1+b6 | 1,529.0 kB | 4,886.0 kB | [list of files] |
| s390x | 1.0.0+ds-1+b9 | 1,685.1 kB | 5,556.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.0.0+ds-1+b8 | 187.8 kB | 1,274.0 kB | [list of files] |
| x32 (unofficial port) | 1.0.0+ds-1+b9 | 199.3 kB | 716.0 kB | [list of files] |