[ Source: flye ]
Package: flye (2.9.3+dfsg2-1)
Links for flye
Debian Resources:
Download Source Package flye:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
de novo assembler for single molecule sequencing reads using repeat graphs
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
Other Packages Related to flye
|
|
|
|
-
- dep: libc6 (>= 2.34) [not alpha, ia64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: libgcc-s1 (>= 3.0) [not alpha, ia64, riscv64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
-
- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-six
- Python 2 and 3 compatibility library
-
- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download flye
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha (unofficial port) | 22,589.8 kB | 37,051.0 kB | [list of files] |
| amd64 | 22,636.3 kB | 36,913.0 kB | [list of files] |
| arm64 | 22,561.7 kB | 36,792.0 kB | [list of files] |
| ia64 (unofficial port) | 22,763.6 kB | 38,428.0 kB | [list of files] |
| mips64el | 22,557.3 kB | 37,103.0 kB | [list of files] |
| ppc64 (unofficial port) | 22,630.0 kB | 37,241.0 kB | [list of files] |
| ppc64el | 22,638.2 kB | 37,176.0 kB | [list of files] |
| riscv64 | 22,615.6 kB | 36,508.0 kB | [list of files] |
| s390x | 22,668.3 kB | 37,096.0 kB | [list of files] |