[ Source: libfastahack ]
Package: fastahack (1.0.0+dfsg-11 and others)
Links for fastahack
Debian Resources:
Download Source Package libfastahack:
- [libfastahack_1.0.0+dfsg-11.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-11.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Other Packages Related to fastahack
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- dep: libc6 (>= 2.34) [not alpha, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libdisorder0 (>= 0.0.2)
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]
- library for indexing and sequence extraction from FASTA files (lib)
- dep: libfastahack0 (>= 1.0.0+dfsg) [not amd64, arm64, ia64, mips64el, ppc64el, sparc64]
-
- dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support library
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
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- dep: libstdc++6 (>= 13.1)
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- dep: libunwind8 [ia64]
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Download fastahack
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.0.0+dfsg-11 | 11.7 kB | 84.0 kB | [list of files] |
| amd64 | 1.0.0+dfsg-11+b1 | 12.3 kB | 41.0 kB | [list of files] |
| arm64 | 1.0.0+dfsg-11+b1 | 11.8 kB | 85.0 kB | [list of files] |
| armel | 1.0.0+dfsg-11+b1 | 11.7 kB | 36.0 kB | [list of files] |
| armhf | 1.0.0+dfsg-11+b1 | 11.6 kB | 36.0 kB | [list of files] |
| hppa (unofficial port) | 1.0.0+dfsg-11 | 11.9 kB | 36.0 kB | [list of files] |
| i386 | 1.0.0+dfsg-11+b1 | 12.5 kB | 44.0 kB | [list of files] |
| ia64 (unofficial port) | 1.0.0+dfsg-11 | 13.3 kB | 49.0 kB | [list of files] |
| m68k (unofficial port) | 1.0.0+dfsg-11 | 11.9 kB | 43.0 kB | [list of files] |
| mips64el | 1.0.0+dfsg-11+b1 | 12.1 kB | 86.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.0.0+dfsg-11 | 12.1 kB | 84.0 kB | [list of files] |
| ppc64el | 1.0.0+dfsg-11+b1 | 12.3 kB | 85.0 kB | [list of files] |
| riscv64 | 1.0.0+dfsg-11+b1 | 11.7 kB | 37.0 kB | [list of files] |
| s390x | 1.0.0+dfsg-11+b1 | 12.2 kB | 41.0 kB | [list of files] |
| sh4 (unofficial port) | 1.0.0+dfsg-11 | 12.5 kB | 83.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.0.0+dfsg-11 | 11.5 kB | 1,045.0 kB | [list of files] |
| x32 (unofficial port) | 1.0.0+dfsg-11 | 12.0 kB | 39.0 kB | [list of files] |