Package: boxshade (3.3.1-14 and others)

Links for boxshade

Debian Resources:

Download Source Package boxshade:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Charles Plessy (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [www.ch.embnet.org]

Similar packages:

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag, Text

Other Packages Related to boxshade

depends

recommends

suggests

enhances

dep: libc6 (>= 2.11) [hppa]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.31) [sh4]

dep: libc6 (>= 2.34) [riscv64]

dep: libc6 (>= 2.7) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]
dep: libc6.1 (>= 2.31) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.7) [alpha]

sug: kalign

Global and progressive multiple sequence alignment

or clustalw

global multiple nucleotide or peptide sequence alignment

or mafft

Multiple alignment program for amino acid or nucleotide sequences

or hmmer

profile hidden Markov models for protein sequence analysis
sug: seaview

Multiplatform interface for sequence alignment and phylogeny
sug: texlive-latex-extra

TeX Live: LaTeX additional packages
sug: xfig

Facility for Interactive Generation of figures under X11

Download boxshade

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.3.1-14	57.3 kB	185.0 kB	[list of files]
amd64	3.3.1-14	54.5 kB	161.0 kB	[list of files]
arm64	3.3.1-14	53.1 kB	160.0 kB	[list of files]
armel	3.3.1-14	54.6 kB	163.0 kB	[list of files]
armhf	3.3.1-14	52.9 kB	135.0 kB	[list of files]
hppa (unofficial port)	3.3.1-14	52.0 kB	157.0 kB	[list of files]
i386	3.3.1-14	56.0 kB	176.0 kB	[list of files]
ia64 (unofficial port)	3.3.1-14	68.1 kB	277.0 kB	[list of files]
m68k (unofficial port)	3.3.1-14	53.0 kB	167.0 kB	[list of files]
mips64el	3.3.1-14	53.3 kB	187.0 kB	[list of files]
ppc64 (unofficial port)	3.3.1-14	56.1 kB	193.0 kB	[list of files]
ppc64el	3.3.1-14	56.4 kB	193.0 kB	[list of files]
riscv64	3.3.1-14+b2	52.7 kB	152.0 kB	[list of files]
s390x	3.3.1-14	52.9 kB	168.0 kB	[list of files]
sh4 (unofficial port)	3.3.1-14	60.8 kB	156.0 kB	[list of files]
sparc64 (unofficial port)	3.3.1-14	50.4 kB	170.0 kB	[list of files]
x32 (unofficial port)	3.3.1-14	54.4 kB	160.0 kB	[list of files]