Package: biobambam2 (2.0.185+ds-2)

Links for biobambam2

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Download Source Package biobambam2:

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Homepage [gitlab.com]

Similar packages:

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Other Packages Related to biobambam2

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libc6.1 (>= 2.34) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]

GCC support library

dep: libgcc-s1 (>= 3.4) [not arm64, i386, ia64, ppc64el]

dep: libgcc-s1 (>= 4.2) [ia64]

dep: libgcc-s1 (>= 7) [i386]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libmaus2-2 (>= 2.0.813+ds)

collection of data structures and algorithms for biobambam
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Download biobambam2

Download for all available architectures
Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	9,150.3 kB	73,920.0 kB	[list of files]
amd64	9,203.8 kB	64,327.0 kB	[list of files]
arm64	8,563.8 kB	64,163.0 kB	[list of files]
i386	9,933.6 kB	71,707.0 kB	[list of files]
ia64 (unofficial port)	10,230.3 kB	117,346.0 kB	[list of files]
mips64el	7,602.0 kB	75,740.0 kB	[list of files]
ppc64el	8,944.3 kB	76,579.0 kB	[list of files]
riscv64	8,815.6 kB	51,675.0 kB	[list of files]
x32 (unofficial port)	9,225.9 kB	60,999.0 kB	[list of files]