[ Source: r-bioc-grohmm ]
Package: r-bioc-grohmm (1.36.0-1 and others)
Links for r-bioc-grohmm
Debian Resources:
Download Source Package r-bioc-grohmm:
- [r-bioc-grohmm_1.36.0-1.dsc]
- [r-bioc-grohmm_1.36.0.orig.tar.gz]
- [r-bioc-grohmm_1.36.0-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
GRO-seq Analysis Pipeline
This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).
The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.
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Download r-bioc-grohmm
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.36.0-1 | 4,343.2 kB | 4,523.0 kB | [list of files] |
| amd64 | 1.36.0-1 | 4,342.9 kB | 4,515.0 kB | [list of files] |
| arm64 | 1.36.0-1 | 4,340.8 kB | 4,523.0 kB | [list of files] |
| hppa (unofficial port) | 1.36.0-1 | 4,343.5 kB | 4,516.0 kB | [list of files] |
| ia64 (unofficial port) | 1.36.0-1 | 4,349.2 kB | 4,558.0 kB | [list of files] |
| mips64el | 1.36.0-1 | 4,340.4 kB | 4,526.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.36.0-1 | 4,346.3 kB | 4,588.0 kB | [list of files] |
| ppc64el | 1.36.0-1 | 4,346.4 kB | 4,523.0 kB | [list of files] |
| riscv64 | 1.36.0-1 | 4,342.6 kB | 4,499.0 kB | [list of files] |
| s390x | 1.36.0-1 | 4,344.1 kB | 4,515.0 kB | [list of files] |
| sh4 (unofficial port) | 1.36.0-1 | 4,344.3 kB | 4,522.0 kB | [list of files] |
| x32 (unofficial port) | 1.32.0-1 | 4,332.9 kB | 4,498.0 kB | [list of files] |